我正在try 使用YAML文件创建一个Conda环境(通过Snakemake),以便运行MAGeCK Flute
:
name: mageck_flute
channels:
- bioconda
dependencies:
- bioconductor-mageckflute
- bioconductor-clusterprofiler
- r-ggplot2
我得到以下错误:
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
Could not solve for environment specs
The following packages are incompatible
├─ bioconductor-clusterprofiler is uninstallable because there are no viable options
│ ├─ bioconductor-clusterprofiler [2.4.3|3.0.4|...|4.6.0] would require
│ │ └─ r-magrittr but there are no viable options
│ │ ├─ r-magrittr 1.5 would require
│ │ │ └─ r 3.2.2* , which does not exist (perhaps a missing channel);
│ │ ├─ r-magrittr 1.5 would require
│ │ │ └─ r 3.3.1* , which requires
│ │ │ └─ r-base [3.3.1 |3.3.1 6], which requires
│ │ │ └─ icu 54.* , which does not exist (perhaps a missing channel);
│ │ ├─ r-magrittr [1.5|2.0.1|2.0.2|2.0.3] conflicts with any installable versions previously reported;
│ │ ├─ r-magrittr 1.5 would require
│ │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
│ │ ├─ r-magrittr 1.5 would require
│ │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
│ │ └─ r-magrittr 1.5 would require
│ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel);
│ ├─ bioconductor-clusterprofiler 3.0.5 would require
│ │ └─ r 3.3.1* , which cannot be installed (as previously explained);
│ └─ bioconductor-clusterprofiler [3.18.0|3.18.1] would require
│ ├─ r-base >=4.0,<4.1.0a0 with the potential options
│ │ ├─ r-base [4.0.0|4.0.1|4.0.2|4.0.3], which can be installed;
│ │ ├─ r-base [4.0.3|4.0.5] would require
│ │ │ └─ libcurl [>=7.75.0,<9.0a0 |>=7.76.1,<9.0a0 ] but there are no viable options
│ │ │ ├─ libcurl [7.75.0|7.76.0|...|7.81.0] would require
│ │ │ │ └─ libnghttp2 >=1.43.0,<2.0a0 but there are no viable options
│ │ │ │ ├─ libnghttp2 [1.46.0|1.47.0|1.51.0|1.52.0] would require
│ │ │ │ │ └─ c-ares >=1.18.1,<2.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ libnghttp2 1.52.0 conflicts with any installable versions previously reported;
│ │ │ │ ├─ libnghttp2 1.43.0 would require
│ │ │ │ │ └─ c-ares >=1.17.1,<2.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ libnghttp2 1.43.0 would require
│ │ │ │ │ └─ c-ares >=1.17.2,<2.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ └─ libnghttp2 1.46.0 conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [7.82.0|7.83.0|...|8.1.2] would require
│ │ │ │ └─ libnghttp2 [>=1.47.0,<2.0a0 |>=1.51.0,<2.0a0 |>=1.52.0,<2.0a0 ] but there are no viable options
│ │ │ │ ├─ libnghttp2 [1.46.0|1.47.0|1.51.0|1.52.0], which cannot be installed (as previously explained);
│ │ │ │ └─ libnghttp2 1.52.0 conflicts with any installable versions previously reported;
│ │ │ └─ libcurl [7.78.0|7.80.0|...|8.1.1] conflicts with any installable versions previously reported;
│ │ ├─ r-base [4.0.5|4.1.0|4.1.1|4.1.2|4.1.3] would require
│ │ │ └─ libtiff >=4.3.0,<4.5.0a0 but there are no viable options
│ │ │ ├─ libtiff 4.4.0 would require
│ │ │ │ └─ libdeflate >=1.12,<1.13.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libtiff 4.4.0 would require
│ │ │ │ └─ libdeflate >=1.13,<1.14.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libtiff [4.3.0|4.4.0] would require
│ │ │ │ └─ libdeflate >=1.10,<1.11.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libtiff [4.4.0|4.5.0] would require
│ │ │ │ └─ libdeflate >=1.14,<1.15.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libtiff 4.4.0 conflicts with any installable versions previously reported;
│ │ │ ├─ libtiff 4.3.0 would require
│ │ │ │ └─ libdeflate >=1.8,<1.9.0a0 , which conflicts with any installable versions previously reported;
│ │ │ └─ libtiff 4.3.0 would require
│ │ │ └─ libdeflate >=1.7,<1.8.0a0 , which conflicts with any installable versions previously reported;
│ │ └─ r-base [4.0.5|4.1.3] would require
│ │ └─ libtiff >=4.4.0,<4.5.0a0 but there are no viable options
│ │ ├─ libtiff 4.4.0, which cannot be installed (as previously explained);
│ │ ├─ libtiff 4.4.0, which cannot be installed (as previously explained);
│ │ ├─ libtiff [4.3.0|4.4.0], which cannot be installed (as previously explained);
│ │ ├─ libtiff [4.4.0|4.5.0], which cannot be installed (as previously explained);
│ │ └─ libtiff 4.4.0 conflicts with any installable versions previously reported;
│ ├─ r-dplyr but there are no viable options
│ │ ├─ r-dplyr 0.5.0 would require
│ │ │ └─ r-bh >=1.58.0_1 but there are no viable options
│ │ │ ├─ r-bh 1.60.0_2 would require
│ │ │ │ └─ r-base 3.3.2* but there are no viable options
│ │ │ │ ├─ r-base [3.3.1|3.3.2], which cannot be installed (as previously explained);
│ │ │ │ └─ r-base 3.3.2 conflicts with any installable versions previously reported;
│ │ │ ├─ r-bh [1.58.0_1|1.60.0_2] would require
│ │ │ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel);
│ │ │ ├─ r-bh 1.60.0_2 would require
│ │ │ │ └─ r 3.3.1* , which cannot be installed (as previously explained);
│ │ │ ├─ r-bh [1.60.0_2|1.62.0_1|...|1.81.0_1] conflicts with any installable versions previously reported;
│ │ │ ├─ r-bh 1.58.0_1 would require
│ │ │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
│ │ │ └─ r-bh 1.58.0_1 would require
│ │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
│ │ ├─ r-dplyr 0.5.0 would require
│ │ │ └─ r-base 3.3.1* , which cannot be installed (as previously explained);
│ │ ├─ r-dplyr [0.4.3|0.5.0] conflicts with any installable versions previously reported;
│ │ ├─ r-dplyr [0.7.0|0.7.4|...|1.1.2] conflicts with any installable versions previously reported;
│ │ ├─ r-dplyr 0.4.2 would require
│ │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
│ │ ├─ r-dplyr [0.4.2|0.4.3] would require
│ │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
│ │ └─ r-dplyr 0.4.3 would require
│ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel);
│ └─ r-magrittr but there are no viable options
│ ├─ r-magrittr 1.5, which cannot be installed (as previously explained);
│ ├─ r-magrittr 1.5, which cannot be installed (as previously explained);
│ ├─ r-magrittr [1.5|2.0.1|2.0.2|2.0.3] conflicts with any installable versions previously reported;
│ ├─ r-magrittr 1.5, which cannot be installed (as previously explained);
│ ├─ r-magrittr 1.5, which cannot be installed (as previously explained);
│ └─ r-magrittr 1.5, which cannot be installed (as previously explained);
├─ bioconductor-mageckflute is uninstallable because there are no viable options
│ ├─ bioconductor-mageckflute 1.10.0 would require
│ │ ├─ bioconductor-clusterprofiler >=3.18.0,<3.19.0 , which cannot be installed (as previously explained);
│ │ ├─ r-base >=4.0,<4.1.0a0 with the potential options
│ │ │ ├─ r-base [4.0.0|4.0.1|4.0.2|4.0.3], which can be installed;
│ │ │ ├─ r-base [4.0.3|4.0.5], which cannot be installed (as previously explained);
│ │ │ ├─ r-base [4.0.5|4.1.0|4.1.1|4.1.2|4.1.3], which cannot be installed (as previously explained);
│ │ │ └─ r-base [4.0.5|4.1.3], which cannot be installed (as previously explained);
│ │ └─ r-ggrepel but there are no viable options
│ │ ├─ r-ggrepel 0.6.5 would require
│ │ │ └─ r-base 3.3.2* but there are no viable options
│ │ │ ├─ r-base [3.3.1|3.3.2], which cannot be installed (as previously explained);
│ │ │ └─ r-base 3.3.2 conflicts with any installable versions previously reported;
│ │ ├─ r-ggrepel 0.5 would require
│ │ │ └─ r 3.2.2* , which does not exist (perhaps a missing channel);
│ │ ├─ r-ggrepel [0.5|0.6.5] would require
│ │ │ └─ r 3.3.1* , which cannot be installed (as previously explained);
│ │ └─ r-ggrepel [0.6.5|0.7.0|...|0.9.3] conflicts with any installable versions previously reported;
│ ├─ bioconductor-mageckflute [1.12.0|1.14.0] would require
│ │ └─ r-base >=4.1,<4.2.0a0 but there are no viable options
│ │ ├─ r-base [4.0.5|4.1.0|4.1.1|4.1.2|4.1.3], which cannot be installed (as previously explained);
│ │ ├─ r-base [4.0.5|4.1.3], which cannot be installed (as previously explained);
│ │ └─ r-base 4.1.3 would require
│ │ └─ libtiff >=4.5.0,<4.6.0a0 but there are no viable options
│ │ ├─ libtiff [4.4.0|4.5.0], which cannot be installed (as previously explained);
│ │ ├─ libtiff 4.5.0 would require
│ │ │ └─ libdeflate >=1.17,<1.18.0a0 , which conflicts with any installable versions previously reported;
│ │ ├─ libtiff 4.5.0 would require
│ │ │ └─ libdeflate >=1.16,<1.17.0a0 , which conflicts with any installable versions previously reported;
│ │ ├─ libtiff [4.5.0|4.5.1] would require
│ │ │ └─ libdeflate >=1.18,<1.19.0a0 , which conflicts with any installable versions previously reported;
│ │ └─ libtiff 4.5.0 conflicts with any installable versions previously reported;
│ ├─ bioconductor-mageckflute [1.2.2|1.2.3|1.4.2|1.6.0] would require
│ │ └─ r-ggextra , which requires
│ │ └─ r-shiny >=0.13.0 but there are no viable options
│ │ ├─ r-shiny [1.0.3|1.0.5|1.1.0|1.2.0] would require
│ │ │ └─ r-htmltools >=0.3.5 , which conflicts with any installable versions previously reported;
│ │ ├─ r-shiny [1.3.0|1.3.2] would require
│ │ │ └─ r-htmltools >=0.3.6 , which conflicts with any installable versions previously reported;
│ │ ├─ r-shiny [1.4.0|1.4.0.2|1.5.0] would require
│ │ │ └─ r-htmltools >=0.4.0 , which conflicts with any installable versions previously reported;
│ │ ├─ r-shiny 1.6.0 would require
│ │ │ └─ r-digest >=0.6.25 , which conflicts with any installable versions previously reported;
│ │ ├─ r-shiny [1.7.0|1.7.1|1.7.2|1.7.3|1.7.4] would require
│ │ │ └─ r-htmltools >=0.5.2 , which conflicts with any installable versions previously reported;
│ │ └─ r-shiny [0.13.2|0.14.2|...|1.7.1] conflicts with any installable versions previously reported;
│ └─ bioconductor-mageckflute [1.8.0|2.2.0] would require
│ └─ r-msigdbr , which requires
│ └─ r-dplyr >=0.7.0 , which conflicts with any installable versions previously reported;
└─ r-ggplot2 is uninstallable because there are no viable options
├─ r-ggplot2 2.2.1 would require
│ └─ r-reshape2 but there are no viable options
│ ├─ r-reshape2 [1.4.2|1.4.3|1.4.4] would require
│ │ └─ r-stringr but there are no viable options
│ │ ├─ r-stringr 1.1.0 would require
│ │ │ └─ r 3.3.1* , which cannot be installed (as previously explained);
│ │ ├─ r-stringr [1.0.0|1.1.0|...|1.5.0] conflicts with any installable versions previously reported;
│ │ ├─ r-stringr 1.0.0 would require
│ │ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
│ │ ├─ r-stringr 1.0.0 would require
│ │ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
│ │ └─ r-stringr 1.0.0 would require
│ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel);
│ ├─ r-reshape2 1.4.1 would require
│ │ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
│ ├─ r-reshape2 1.4.1 would require
│ │ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
│ ├─ r-reshape2 1.4.1 would require
│ │ └─ r-base 3.2.2* , which does not exist (perhaps a missing channel);
│ └─ r-reshape2 [1.4.1|1.4.2|1.4.3|1.4.4] conflicts with any installable versions previously reported;
├─ r-ggplot2 [2.0.0|2.1.0] would require
│ └─ r 3.2.2* , which does not exist (perhaps a missing channel);
├─ r-ggplot2 [2.1.0|2.2.0|2.2.1] would require
│ ├─ r 3.3.1* , which cannot be installed (as previously explained);
│ └─ r-base 3.3.1* , which cannot be installed (as previously explained);
├─ r-ggplot2 [2.1.0|2.2.0|...|3.4.2] conflicts with any installable versions previously reported;
├─ r-ggplot2 1.0.1 would require
│ └─ r-base 3.2.0* , which does not exist (perhaps a missing channel);
├─ r-ggplot2 1.0.1 would require
│ └─ r-base 3.2.1* , which does not exist (perhaps a missing channel);
└─ r-ggplot2 1.0.1 would require
└─ r-base 3.2.2* , which does not exist (perhaps a missing channel).
我已经在Conda基本环境中手动安装了这些R包,没有任何问题,但我想使用上面的YAML文件将其与Snakemake
规则一起使用.
如何通过YAML文件安装这些包?